Motif analysis
Types of splicing motifs
The table below shows the various types of splicing motifs found in DEDB and its frequency.
| Motif | Number | Percentage |
| GTAG | 46475 | 99.197% |
| GCAG | 306 | 0.653% |
| ATAC | 8 | 0.017% |
| Others | 62 | 0.132% |
Summary
The table below shows a summary of the total information content of the motif on a per exon/intron type basis.
| Motif type | Type of exon/intron | Number | All | 1st quartile | 2nd quartile | 3rd quartile | 4th quartile |
| acceptor | multi constitutive internal exons | 27420 | 9.754 | 9.838 | 9.549 | 9.572 | 10.095 |
| donor | multi constitutive internal exons | 27281 | 8.534 | 8.653 | 8.365 | 8.400 | 8.746 |
Individual Information Content Summary
The table below shows a summary of the individual information content of several types of donor and acceptor sites.
| Type | Number | Min | 1st Qu | Median | Mean | 3rd Qu | Max | IQR |
| Cassette exon acceptor | 1316 | -10.820 | 3.960 | 7.196 | 7.052 | 10.360 | 22.300 | 6.400 |
| Intron retention acceptor | 1038 | -18.210 | 3.463 | 6.838 | 6.139 | 9.490 | 19.030 | 6.027 |
| Alternative acceptor | 990 | -15.680 | 3.356 | 6.051 | 5.968 | 9.384 | 19.140 | 6.028 |
| Constitutive internal exon acceptor | 27497 | -17.110 | 7.367 | 9.952 | 9.753 | 12.430 | 23.290 | 5.063 |
| Constitutive termination exon acceptor | 10070 | -14.450 | 7.655 | 10.300 | 9.976 | 12.660 | 22.640 | 5.005 |
| Cassette exon donor | 1290 | -9.339 | 4.798 | 7.170 | 6.802 | 9.259 | 13.890 | 4.461 |
| Intron retention donor | 1007 | -8.467 | 3.208 | 6.115 | 5.420 | 8.145 | 14.610 | 4.937 |
| Alternative donor | 1411 | -8.394 | 3.701 | 5.957 | 5.610 | 7.962 | 13.680 | 4.261 |
| Constitutive internal exon donor | 27357 | -10.270 | 7.142 | 8.919 | 8.526 | 10.380 | 15.190 | 3.238 |
| Constitutive initiation exon donor | 8918 | -10.520 | 6.512 | 8.456 | 7.940 | 10.050 | 14.990 | 3.538 |
Detailed results
The following figures and tables shows detailed results of the motif analysis.
Multi constitutive internal exons all acceptor analysis
| Number of motifs | Number of canonical motifs | Information Content |
| 27435 | 27420 | 9.75361 |
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Multi constitutive internal exons 1st quartile acceptor analysis
| Number of motifs | Number of canonical motifs | Information Content |
| 6825 | 6821 | 9.83805 |
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Multi constitutive internal exons 2nd quartile acceptor analysis
| Number of motifs | Number of canonical motifs | Information Content |
| 6877 | 6874 | 9.54853 |
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Multi constitutive internal exons 3rd quartile acceptor analysis
| Number of motifs | Number of canonical motifs | Information Content |
| 6863 | 6858 | 9.57175 |
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Multi constitutive internal exons 4th quartile acceptor analysis
| Number of motifs | Number of canonical motifs | Information Content |
| 6870 | 6867 | 10.0947 |
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Multi constitutive internal exons all donor analysis
| Number of motifs | Number of canonical motifs | Information Content |
| 27435 | 27281 | 8.53368 |
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Multi constitutive internal exons 1st quartile donor analysis
| Number of motifs | Number of canonical motifs | Information Content |
| 6825 | 6789 | 8.6535 |
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Multi constitutive internal exons 2nd quartile donor analysis
| Number of motifs | Number of canonical motifs | Information Content |
| 6877 | 6834 | 8.36514 |
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Multi constitutive internal exons 3rd quartile donor analysis
| Number of motifs | Number of canonical motifs | Information Content |
| 6863 | 6818 | 8.4001 |
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Multi constitutive internal exons 4th quartile donor analysis
| Number of motifs | Number of canonical motifs | Information Content |
| 6870 | 6840 | 8.74601 |
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Histogram of individual information content
The individual information content of the various types of donors and acceptors are shown below:
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